Saturday, March 26, 2005
Creation of a simple GUI for the tool;
Script to convert ADF from previous format to new one
The new format is composed of three parts : meta-data (adh), Feature/Reporter and CompositeSequence.
This script is supposed to create the three parts.
Currently, the script, written in Perl split feature/Reporter and CompositeSequence data in two files (adr and adc) following header Items. Now checking is done.
So, the script only support ADF text file and is only useful if there are also CompositeSequence data.
In the future, the script will propose to create interactively the adh part/file.
Saturday, March 19, 2005
requires Internet connection.
Tuesday, March 15, 2005
Unix script updated
Monday, March 14, 2005
Updated windows script to launch the tool.
Updated shortcut installer
Fixed problem to open window in normal size (not minimized)
Fixed/clean Unix shortcut file.
Saturday, March 12, 2005
Added DBVersion for MAGE identifier generation
It will be replaced by the version of th DB. Currently, only the MGED ontology is supported.
Updated MAGE-stk API
Wednesday, March 09, 2005
Updated MAGE identifier export during ADF conversion
Previously, the export was done after the conversion (and also using more memory).
Performance should be improved.
updated file XML Schema and jaxb
Updated as well JaxB api
Tuesday, March 08, 2005
Compilation wiki page created
Currently, only explains compilation with Ant from Apache software.
Updated ADFConverterLoggerImpl for updated Log4j api
tgz, zip, bz2 project released
This version is the preview version 1.0 RC1.
Added Examples file to sourceforge
Files are in the examples directory.
Monday, March 07, 2005
New Test Results wiki Page
This page contains results from test files.
Currently, there is the study of the 60000 features ADF tests.
60000 features/Reporters test passed
The checking/conversion has been made in 30 hours (can still be improved).
See new Tests wiki page.
Saturday, March 05, 2005
AdfConversion wiki page created
- Created objects
- MAGE identifieer generation
Friday, March 04, 2005
Installation wiki page updated
Information for archive file.
INSTALL.txt file created
New version of the approved databases file
A version number is added on the first line
Wednesday, March 02, 2005
Question: shall we add the MGED ontology version to the MAGE identifier?
The database codes are prefixed with ebi.ac.uk:Database:, e.g. ebi.ac.uk:Database:embl. In the cases of databases where a version/build is known, you can provide this information within the code, e.g. ebi.ac.uk:Database:unigene:129 (or unigene:129 in the case of ADF submissions via MIAMExpress).
Should add it as the version number is retrieved from MGED Ontology file?
and do the same for others databases with the current database number?
Or shall we add databases version in the configuration file or in a txt file?